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HDNRA_data COVID19

Source: R/COVID19.R
COVID19.Rd

A COVID19 data set from NCBI with ID GSE152641. The data set profiled peripheral blood from 24 healthy controls and 62 prospectively enrolled patients with community-acquired lower respiratory tract infection by SARS-COV-2 within the first 24 hours of hospital admission using RNA sequencing.

Usage

data(COVID19)

Format

'COVID19'

A data frame with 86 observations on the following 2 groups.

healthy group1

row 2 to row 19, and row 82 to 87, in total 24 healthy controls

patients group2

row 20 to 81, in total 62 prospectively enrolled patients

References

Thair SA, He YD, Hasin-Brumshtein Y, Sakaram S, Pandya R, Toh J, Rawling D, Remmel M, Coyle S, Dalekos GN, others (2021). “Transcriptomic similarities and differences in host response between SARS-CoV-2 and other viral infections.” Iscience, 24(1). doi:10.1016/j.isci.2020.101947 .

Examples

library(HDNRA)
data(COVID19)
dim(COVID19)
#> [1]    87 20460
group1 <- as.matrix(COVID19[c(2:19, 82:87), ]) ## healthy group
dim(group1)
#> [1]    24 20460
group2 <- as.matrix(COVID19[-c(1:19, 82:87), ]) ## COVID-19 patients
dim(group2)
#> [1]    62 20460